Table 1 List of isolates used in this study divided by method used to retrieve their genome or CRRs sequences
Isolate | Country | District, village | Region | Host | Year | Genotype | References | |
|---|---|---|---|---|---|---|---|---|
Whole-genome sequencing | ||||||||
Chui-3 | KG | KashkaSuu | Chui Valley | P. communis var. Talgarskaya | 2021 | (A, u, α) | This work | |
GE6053 | GE | Sighnaghi, Jugaani | Kakheti | M. domestica | 2021 | (A, a, α) | This work | |
GE6163 | GE | Sighnaghi, Jugaani | Kakheti | M. domestica | 2021 | (A, z, α) | This work | |
GE6931 | GE | Khashuri, Gomi | Shida Kartli | Cydonia sp. | 2021 | (A, z, α) | This work | |
GE13011 | GE | Marneuli, Kachagani | Kvemo Kartli | M. domestica | 2022 | (A, ä, α) | This work | |
GE13133 | GE | Marneuli, Kachagani | Kvemo Kartli | M. domestica | 2022 | (A, z, α) | This work | |
IS-9 | KG | Tong, Bokonbaev | Issyk-Kul North | P. communis var. Talgarskaya | 2021 | (A, t, α) | This work | |
IS-19 | KG | Barskoon | Issyk-Kul South | P. communis var. Talgarskaya | 2021 | (A, t, α) | This work | |
KazE4 | KZ | Resul | Zhambyl | P. communis | 2014 | (A, t, α) | This work | |
KazE6 | KZ | Sayran | South-Kazakhstan | M. domestica | 2014 | (ζ, a, α) | This work | |
KazE7 | KZ | Sayran | South-Kazakhstan | M. domestica | 2014 | (ζ, à , α) | This work | |
KazE9 | KZ | №173.2.1 | N.A. | N.A. | 2013 | (Δ, a, α) | This work | |
KazE15 | KZ | №87 | Almaty reg. | Chaenomeles japonica | 2015 | (A, t, α) | This work | |
KazE17 | KZ | Enbekshikazakh | Almaty reg. | Malus sieversii | 2016 | (D, a, α) | This work | |
KazE19 | KZ | n.a. | Almaty reg. | M. domestica var. Aport | 2017 | (A, t, α) | This work | |
KG03-22 | KG | YshelieSakMazar, Arslonbob | Jalal-Abad | C. turkestanica | 2022 | (A, å, α) | This work | |
KG04-22 | KG | Oogantalaa, Arslonbob | Jalal-Abad | P. communis var. Talgarskaya | 2022 | (A, å, α) | This work | |
KG09-22 | KG | Kemin district | Issyk-Kul North | M. domestica | 2022 | (D, ʎ, α) | This work | |
KG49 | KG |  | Chui Valley | M. domestica | 2013 | (A, t, α) | This work | |
KZ89 | KZ |  | Almaty reg. | M. domestica | 2011 | (Z, a, α) | This work | |
TaE1 | TJ | Shahrinav | Tajikistan | M. domestica | 2017 | (B, t, α) | This work | |
TL-13.1 | KG | Bakai-Ata, Ozgorush | Talas | M. domestica var. Prevoshodnaya | 2021 | (D, б, α) | This work | |
TL-46 | KG | Bakai-Ata, Ak Dobo | Talas | P. communis var. Talgarskaya | 2021 | (D, б, α) | This work | |
TL-63 | KG | Bakai-Ata, Tegirmen Sai | Talas | P. communis var. Talgarskaya | 2021 | (Л, a, α) | This work | |
UzE2 | UZ | Samarkand | Uzbekistan | M. domestica | 2017 | (D, a, α) | This work | |
UzE3 | UZ | Samarkand | Uzbekistan | M. domestica | 2017 | (A, a, α) | This work | |
WP-13 | KG | Nooken, Tockool-Ata | Jalal-Abad | Pyrus korzhinski | 2021 | (A, ë, α) | This work | |
CRRs sequencing | ||||||||
GE01 | GE | Kareli | Shida Kartli | M. domestica | 2016 | (A, z, α) | (Gaganidze 2021) | |
GE02 | GE | Marneuli | Kvemo Kartli | M. domestica | 2018 | (A, z, α) | (Gaganidze 2021) | |
GE03 | GE | Marneuli | Kvemo Kartli | M. domestica | 2018 | (A, a, α) | (Gaganidze 2021) | |
GE04 | GE | Gori | Shida Kartli | M. domestica | 2018 | (A, a, α) | (Gaganidze 2021) | |
KG44 | KG |  | Chui Valley | M. domestica | 2013 | (A, t, α) | (Doolotkeldieva 2021) | |
KG52 | KZ |  | Chui Valley | P. communis | 2013 | (A, t, α) | (Doolotkeldieva 2021) | |
KTMU-15 | KG | JetiOguz, Saruu | Issyk-Kul South | P. communis var. Talgarskaya | 2018 | (A, t, α) | (Doolotkeldieva 2021) | |
KZ18 | KZ |  | Zhambyl | P. communis | 2013 | (Z, a, α) | (Doolotkeldieva 2021) | |
KZ74 | KZ |  | Almaty reg. | M. domestica | 2013 | (A, t, α) | (Doolotkeldieva 2021) | |
KZ79 | KZ |  | Almaty reg. | M. domestica | 2013 | (A, t, α) | (Doolotkeldieva 2021) | |
Genome sequence previously available | ||||||||
241/07 | IL |  |  | P. communis | 2007 | (Я, a, α) | (Parcey 2020) | |
99-east-3-1 | CN | Bayingolin | Xinjiang | P. sinkiangensis | 2021 | (Ã, t, α) | (Fei et al. 2023b) | |
BPIC847 | GR |  | Arcadia | Pyrus sp. | 1984 | (A, a, α) | (Bühlmann 2015) | |
CFBP 1232T | UK |  |  | P. communis | 1959 | (A, a, α) | (Mann 2013) | |
CFBP 1252 | UK |  |  | P. communis | 1958 | (A, a, α) | (Bühlmann 2015) | |
CFBP 1367 | FR |  |  | Crataegus oxyacantha | 1972 | (A, a, α) | (Bühlmann 2015) | |
CFBP 1430 | FR |  |  | C. oxyacantha | 1972 | (A, a, α) | (Smits et al. 2010) | |
CFBP 2586 | IE |  |  | Pyracantha sp. | 1986 | (A, a, α) | (Bühlmann 2015) | |
CFBP 3020 | NL |  |  | P. communis | 1981 | (A, a, α) | (Bühlmann 2015) | |
CFBP 3098 | IL | Masluk | Negev | M. domestica | 1987 | (D, a, α) | (Bühlmann 2015) | |
CFBP 3860 | HU |  |  | Malus sp. | 1996 | (A, a, α) | (Bühlmann 2015) | |
CPBF 1309 | PT |  | Alcobaça | P. communis | 2010 | (D, a, α) | (Bühlmann 2015) | |
E-2 | BY |  | Myadzel | Malus sp. | 2007 | (D, a, α) | (Lagonenko et al. 2008) | |
Ea1/79 | DE |  |  | Cotoneaster sp. | 1979 | (D, a, α) | (Parcey 2020) | |
Ea1 | IR |  | Loristan | Pyrus sp. | 2009/10 | (C, s, α) | (Bühlmann 2015) | |
Ea2 | IR |  | Loristan | Pyrus sp. | 2009/10 | (З, a, α) | (Bühlmann 2015) | |
Ea32 | IR |  | East-Azerbaizjan | Cydonia sp. | 2009/10 | (A, a, α) | (Bühlmann 2015) | |
Ea33 | IR |  | Semnan | Cydonia sp. | 2009/10 | (C, x, α) | (Bühlmann 2015) | |
Ea169 | IL |  |  | P. communis | N/A | (Ɵ, a, α) | (Parcey 2020) | |
Ea209 | IL |  |  | P. communis | 1997 | (A, a, α) | (Bühlmann 2015) | |
Ea263 | IL |  |  | C. oblonga | 1997 | (F, d, α) | (Bühlmann 2015) | |
Ea326 | CH |  | Aargau | Pyracantha sp. | 1990 | (D, a, α) | (Bühlmann 2015) | |
Ea4/82 | EG |  |  | P. communis | 1982 | (A, a, α) | (Bühlmann 2015) | |
Ea650 | PL |  |  | Crataegus monogyna | 1986 | (D, a, α) | (Parcey 2020) | |
Ea779/01 | AT |  | Vorarlberg | Pyrus sp. | 2001 | (D, a, α) | (Bühlmann 2015) | |
EaA-11 | LB |  |  | M. domestica | N/A | (Ю, a, α) | (Parcey 2020) | |
EaB-110 | LB |  |  | M. domestica | N/A | (Ö, a, α) | (Parcey 2020) | |
EaK1 | IR |  | Karaj | Malus sp. | 2004 | (A, a, α) | (Bühlmann 2015) | |
FEa9 | PL |  | Wojewodztwo Mazowiecki | Pyracantha sp. | 2011 | (D, a, α) | (Bühlmann 2015) | |
FEa10 | KZ | Enbekshikazakh | Almaty reg. | M. domestica | 2012 | (A, u, α) | (Bühlmann 2015) | |
FEa11 | KZ |  | Almaty reg. |  | 2012 | (Z, a, α) | (Bühlmann 2015) | |
KBE1 | RU |  | Kabardino-Balkaria | Cydonia sp. | 2009 | (Б, a, α) | (Bühlmann 2015) | |
KE9 | RU |  | Kaliningrad | Crataegus sp. | 2003 | (D, a, α) | (Bühlmann 2015) | |
KG58 | KG |  | Chui Valley | M. domestica | 2013 | (A, t, α) | (Bühlmann 2015) | |
KZ03 | KZ |  | Zhambyl | P. communis | 2013 | (Z, a, α) | (Bühlmann 2015) | |
KZ29 | KZ |  | South-Kazakhstan | M. domestica | 2013 | (Z, a, α) | (Bühlmann 2015) | |
Leb A3 | LB |  |  | M. domestica | 1998 | (D, a, α) | (Bühlmann 2015) | |
Leb B66 | LB |  |  | C. oblonga | 1998 | (A, a, α) | (Bühlmann 2015) | |
MOE1 | MD |  | Moldavia | M. domestica | 2007 | (A, y, α) | (Bühlmann 2015) | |
S618-2-2 | CN | Bayingolin, Korla | Xinjiang | P. sinkiangensis | 2021 | (A, t, α) | (Fei et al. 2023a) | |
SAE3 | RU |  | Saratov | M. domestica | 2012 | (A, v, α) | (Bühlmann 2015) | |
SE1 | RU |  | Samara | M. domestica | 2008 | (A, a, α) | (Bühlmann 2015) | |
SE11 | RU |  | Samara | M. domestica | 2012 | (D, a, α) | (Bühlmann 2015) | |
TE4 | RU |  | Tambov | M. domestica | 2007 | (Д, w, α) | (Bühlmann 2015) | |
Tk86 | TK |  | Bursa | Cydonia sp. | 2007 | (Ж, a, α) | (Bühlmann 2015) | |
Tk119 | TK |  | Izmir | P. communis | 2011 | (Г, a, α) | (Bühlmann 2015) | |
Tk159 | TK |  | Zonguldak | Cydonia sp. | 2012 | (A, a, α) | (Bühlmann 2015) | |
VGE1 | RU |  | Volgograd | Cydonia sp. | 2010 | (Є, a, α) | (Bühlmann 2015) | |
VRE4 | RU |  | Voronezh | P. communis | 2010 | (D, a, α) | (Bühlmann 2015) | |
WSDA87-73 | US |  | Washington | M. domestica | N/A | (D, a, α) | (Zeng et al. 2018) | |